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1

How Often Do Protein Genes Navigate Valleys of Low Fitness?

Nelson, Erik, Grishin, Nick

Journal:

Year:

2019

Language:

english

File:

PDF, 523 KB

english, 2019

2

EGFR-Mediated Beclin 1 Phosphorylation in Autophagy Suppression, Tumor Progression, and Tumor Chemoresistance

Wei, Yongjie, Zou, Zhongju, Becker, Nils, Anderson, Matthew, Sumpter, Rhea, Xiao, Guanghua, Kinch, Lisa, Koduru, Prasad, Christudass, Christhunesa S., Veltri, Robert W., Grishin, Nick V., Peyton, Mich

Journal:

Year:

2013

Language:

english

File:

PDF, 2.33 MB

english, 2013

3

Beclin 2 Functions in Autophagy, Degradation of G Protein-Coupled Receptors, and Metabolism

He, Congcong, Wei, Yongjie, Sun, Kai, Li, Binghua, Dong, Xiaonan, Zou, Zhongju, Liu, Yang, Kinch, Lisa N., Khan, Shaheen, Sinha, Sangita, Xavier, Ramnik J., Grishin, Nick V., Xiao, Guanghua, Eskelinen

Journal:

Year:

2013

Language:

english

File:

PDF, 2.15 MB

english, 2013

4

The Ancient Gamete Fusogen HAP2 Is a Eukaryotic Class II Fusion Protein

Fédry, Juliette, Liu, Yanjie, Péhau-Arnaudet, Gérard, Pei, Jimin, Li, Wenhao, Tortorici, M. Alejandra, Traincard, François, Meola, Annalisa, Bricogne, Gérard, Grishin, Nick V., Snell, William J., Rey,

Journal:

Year:

2017

Language:

english

File:

PDF, 6.15 MB

english, 2017

5

The complete mitogenome of Euschemon rafflesia (Lepidoptera: Hesperiidae)

Zhang, Jing, Cong, Qian, Shen, Jinhui, Fan, Xiao-Ling, Wang, Min, Grishin, Nick V.

Journal:

Mitochondrial DNA Part B

Year:

2017

Language:

english

File:

PDF, 1009 KB

english, 2017

6

Gaps in structurally similar proteins: Towards improvement of multiple sequence alignment

James O. Wrabl, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 359 KB

english, 2004

7

SelT, SelW, SelH, and Rdx12: Genomics and Molecular Insights into the Functions of Selenoproteins of a Novel Thioredoxin-like Family †

Dikiy, Alexander, Novoselov, Sergey V., Fomenko, Dmitri E., Sengupta, Aniruddha, Carlson, Bradley A., Cerny, Ronald L., Ginalski, Krzysztof, Grishin, Nick V., Hatfield, Dolph L., Gladyshev, Vadim N.

Journal:

Year:

2007

Language:

english

File:

PDF, 1.12 MB

english, 2007

8

Genome trees and the tree of life

Yuri I. Wolf, Igor B. Rogozin, Nick V. Grishin, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

2002

Language:

english

File:

PDF, 64 KB

english, 2002

9

A Single Kinase Generates the Majority of the Secreted Phosphoproteome

Tagliabracci, Vincent S., Wiley, Sandra E., Guo, Xiao, Kinch, Lisa N., Durrant, Eric, Wen, Jianzhong, Xiao, Junyu, Cui, Jixin, Nguyen, Kim B., Engel, James L., Coon, Joshua J., Grishin, Nick, Pinna, L

Journal:

Year:

2015

Language:

english

File:

PDF, 3.06 MB

english, 2015

10

The WAVE Regulatory Complex Links Diverse Receptors to the Actin Cytoskeleton

Chen, Baoyu, Brinkmann, Klaus, Chen, Zhucheng, Pak, Chi W., Liao, Yuxing, Shi, Shuoyong, Henry, Lisa, Grishin, Nick V., Bogdan, Sven, Rosen, Michael K.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.64 MB

english, 2014

11

Phenotypic and Genotypic Analyses of Genetic Skin Disease through the Online Mendelian Inheritance in Man (OMIM) Database

Sadreyev, Ruslan I, Murray, Mitzi L, Feramisco, Jamison D, Grishin, Nick V, Tsao, Hensin

Journal:

The Journal of Investigative Dermatology

Year:

2009

Language:

english

File:

PDF, 1.39 MB

english, 2009

12

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

Kira S Makarova, Nick V Grishin, Svetlana A Shabalina, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2006

Language:

english

File:

PDF, 884 KB

english, 2006

13

BTLCP proteins: a novel family of bacterial transglutaminase-like cysteine proteinases

Krzysztof Ginalski, Lisa Kinch, Leszek Rychlewski, Nick V. Grishin

Journal:

Trends in Biochemical Sciences

Year:

2004

Language:

english

File:

PDF, 201 KB

english, 2004

14

Absence of TLR11 in Mice Does Not Confer Susceptibility to Salmonella Typhi

Song, Jeongmin, Wilhelm, Cara L., Wangdi, Tamding, Maira-Litran, Tomas, Lee, Seung-Joo, Raetz, Megan, Sturge, Carolyn R., Mirpuri, Julie, Pei, Jimin, Grishin, Nick V., McSorley, Stephen J., Gewirtz, A

Journal:

Year:

2016

Language:

english

File:

PDF, 342 KB

english, 2016

15

Estimating the number of protein folds and families from complete genome data

Yuri I Wolf, Nick V Grishin, Eugene V Koonin

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 210 KB

english, 2000

16

CPDadh: A new peptidase family homologous to the cysteine protease domain in bacterial MARTX toxins

Jimin Pei, Patrick J. Lupardus, K. Christopher Garcia, Nick V. Grishin

Journal:

Protein Science

Year:

2009

Language:

english

File:

PDF, 477 KB

english, 2009

17

COG4849 is a novel family of nucleotidyltransferases

Bong-Hyun Kim, Ruslan Sadreyev, Nick V. Grishin

Journal:

Journal of Molecular Recognition

Year:

2005

Language:

english

File:

PDF, 4.15 MB

english, 2005

18

Combining evolutionary and structural information for local protein structure prediction

Jimin Pei, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 310 KB

english, 2004

19

Unexpected diversity in Shisa-like proteins suggests the importance of their roles as transmembrane adaptors

Jimin Pei, Nick V. Grishin

Journal:

Cellular Signalling

Year:

2012

Language:

english

File:

PDF, 3.14 MB

english, 2012

20

Alternate Pathways for Folding in the Flavodoxin Fold Family Revealed by a Nucleation-growth Model

Erik D. Nelson, Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 258 KB

english, 2006

21

Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black moldStachybotrys

Jeremy Semeiks,Dominika Borek,Zbyszek Otwinowski,Nick V Grishin

Journal:

Year:

2014

Language:

english

File:

PDF, 698 KB

english, 2014

22

Tiger Swallowtail Genome Reveals Mechanisms for Speciation and Caterpillar Chemical Defense

Cong, Qian, Borek, Dominika, Otwinowski, Zbyszek, Grishin, Nick V.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.88 MB

english, 2015

23

A new Hermeuptychia (Lepidoptera, Nymphalidae, Satyrinae) is sympatric and synchronic with H. sosybius in southeast US coastal plains, while another new Hermeuptychia species – not hermes – inhabits south Texas and northeast Mexico

Cong, Qian, Grishin, Nick

Journal:

Year:

2014

Language:

english

File:

PDF, 17.95 MB

english, 2014

24

CASP 11 Target Classification

Kinch, Lisa N., Li, Wenlin, Schaeffer, R. Dustin, Dunbrack, Roland L., Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Grishin, Nick V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 998 KB

english, 2016

25

The first complete genomes of Metalmarks and the classification of butterfly families

Cong, Qian, Shen, Jinhui, Li, Wenlin, Borek, Dominika, Otwinowski, Zbyszek, Grishin, Nick V.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.10 MB

english, 2017

26

Crystallization and preliminary X-ray studies of ornithine decarboxylase fromTrypanosoma brucei

Grishin, Nick V., Osterman, Andrei L., Goldsmith, Elizabeth J., Phillips, Margaret A.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 222 KB

english, 1996

27

The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase

Michael Y. Galperin, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 873 KB

english, 2000

28

The C-terminal domain of HPII catalase is a member of the type I glutamine amidotransferase superfamily

Monica M. Horvath, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 560 KB

english, 2001

29

Protein domain of unknown function DUF1023 is an α/β hydrolase

Mingzhu Zheng, Krzysztof Ginalski, Leszek Rychlewski, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 370 KB

english, 2005

30

Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases

Jimin Pei, Nick V Grishin

Journal:

Trends in Biochemical Sciences

Year:

2001

Language:

english

File:

PDF, 54 KB

english, 2001

31

Membrane Protein Structure Predictions for Exploration

Nick V. Grishin

Journal:

Year:

2012

Language:

english

File:

PDF, 57 KB

english, 2012

32

Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease

Hua Cheng, Nan Shen, Jimin Pei, Nick V. Grishin

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 475 KB

english, 2004

33

A new Heraclides swallowtail (Lepidoptera, Papilionidae) from North America is recognized by the pattern on its neck

Shiraiwa, Kojiro, Cong, Qian, Grishin, Nick V.

Journal:

Year:

2014

Language:

english

File:

PDF, 33.32 MB

english, 2014

34

A New Species of Eracon (Hesperiidae: Pyrginae) Substantiated by a Number of Traits, Including Female Genitalia

Grishin, Nick V., Janzen, Daniel H., Hallwachs, Winnie

Journal:

Journal of the Lepidopterists’ Society

Year:

2014

File:

PDF, 1.01 MB

2014

35

Integrative data helps the assessment of a butterfly within the Udranomia kikkawai species complex (Lepidoptera: Hesperiidae): Immature stages, natural history, and molecular evidence

Bächtold, Alexandra, Kaminski, Lucas A., Magaldi, Luiza M., Oliveira, Paulo S., Del-Claro, Kleber, Janzen, Daniel H., Burns, John M., Grishin, Nick, Hajibabaei, Mehrdad, Hallwachs, Winnie, Freitas, An

Journal:

Zoologischer Anzeiger - A Journal of Comparative Zoology

Year:

2017

Language:

english

File:

PDF, 1.78 MB

english, 2017

36

Targeting the Conserved Fusion Loop of HAP2 Inhibits the Transmission of Plasmodium berghei and falciparum

Angrisano, Fiona, Sala, Katarzyna A., Da, Dari F., Liu, Yanjie, Pei, Jimin, Grishin, Nick V., Snell, William J., Blagborough, Andrew M.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

37

Unveiling one of the rarest ‘butterflies’ ever (Lepidoptera: Hesperiidae, Noctuidae)

Zilli, Alberto, Grishin, Nick V.

Journal:

Systematic Entomology

Year:

2018

Language:

english

File:

PDF, 988 KB

english, 2018

38

Structure, lipid scrambling activity and role in autophagosome formation of ATG9A

Maeda, Shintaro, Yamamoto, Hayashi, Kinch, Lisa N., Garza, Christina M., Takahashi, Satoru, Otomo, Chinatsu, Grishin, Nick V., Forli, Stefano, Mizushima, Noboru, Otomo, Takanori

Journal:

Nature Structural and Molecular Biology

Year:

2020

File:

PDF, 7.61 MB

2020

39

Grouping of amino acid types and extraction of amino acid properties from multiple sequence alignments using variance maximization

James O. Wrabl, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 246 KB

english, 2005

40

Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites

Nick V. Grishin

Journal:

Journal of Molecular Evolution

Year:

1995

Language:

english

File:

PDF, 358 KB

english, 1995

41

Structure and Mechanism of Homoserine Kinase: Prototype for the GHMP Kinase Superfamily

Tianjun Zhou, Matthew Daugherty, Nick V. Grishin, Andrei L. Osterman, Hong Zhang

Journal:

Year:

2000

Language:

english

File:

PDF, 1.39 MB

english, 2000

42

Remote Homology between Munc13 MUN Domain and Vesicle Tethering Complexes

Jimin Pei, Cong Ma, Josep Rizo, Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.92 MB

english, 2009

43

Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator

Georgiy A. Belogurov, Marina N. Vassylyeva, Vladimir Svetlov, Sergiy Klyuyev, Nick V. Grishin, Dmitry G. Vassylyev, Irina Artsimovitch

Journal:

Year:

2007

Language:

english

File:

PDF, 1.92 MB

english, 2007

44

A Gamete-Specific, Sex-Limited Homeodomain Protein in Chlamydomonas

Venkatesh Kurvari, Nick V. Grishin and William J. Snell

Journal:

The Journal of Cell Biology

Year:

1998

Language:

english

File:

PDF, 2.98 MB

english, 1998

45

When COI barcodes deceive: complete genomes reveal introgression in hairstreaks

Cong, Qian, Shen, Jinhui, Borek, Dominika, Robbins, Robert K., Opler, Paul A., Otwinowski, Zbyszek, Grishin, Nick V.

Journal:

Proceedings Biological Sciences

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

46

Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria

Salomon, Dor, Klimko, John A., Trudgian, David C., Kinch, Lisa N., Grishin, Nick V., Mirzaei, Hamid, Orth, Kim, Mougous, Joseph D

Journal:

Year:

2015

Language:

english

File:

PDF, 1.83 MB

english, 2015

47

Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions

Shide Liang, Yaoqi Zhou, Nick Grishin, Daron M. Standley

Journal:

Journal of Computational Chemistry

Year:

2011

Language:

english

File:

PDF, 210 KB

english, 2011

48

Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches

Lukasz Knizewski, Lisa N Kinch, Nick V Grishin, Leszek Rychlewski, Krzysztof Ginalski

Journal:

BMC Structural Biology

Year:

2007

Language:

english

File:

PDF, 761 KB

english, 2007

49

Structurally Analogous Proteins Do Exist!

S.Sri Krishna, Nick V Grishin

Journal:

Year:

2004

Language:

english

File:

PDF, 112 KB

english, 2004

50

Scaling approach to the folding kinetics of large proteins

Nelson, Erik D., Grishin, Nick V.

Journal:

Physical Review E

Year:

2006

Language:

english

File:

PDF, 102 KB

english, 2006

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